Detailed information of SNP:
|
SNP ID:
sf0801535657(Gbrowse)
Chromosome: chr08 Position: 1535657 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 69.61% | 30.39% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 446 | 13.68% | 86.32% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 305 | 17.05% | 82.95% |
| Tropical Japonica | 82 | 4.88% | 95.12% |
| Japonica Intermediate | 59 | 8.47% | 91.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801535657 | G->C | LOC_Os08g03310(LOC_Os08g03310.3) | UTR_5_PRIME |
| sf0801535657 | G->C | LOC_Os08g03310(LOC_Os08g03310.6) | UTR_5_PRIME |
| sf0801535657 | G->C | LOC_Os08g03310(LOC_Os08g03310.5) | UTR_5_PRIME |
| sf0801535657 | G->C | LOC_Os08g03310(LOC_Os08g03310.4) | UTR_5_PRIME |
| sf0801535657 | G->C | LOC_Os08g03310(LOC_Os08g03310.1) | UTR_5_PRIME |