Detailed information of SNP:
|
SNP ID:
sf0801624059(Gbrowse)
Chromosome: chr08 Position: 1624059 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1264 | 98.18% | 1.82% |
| All Indica | 785 | 98.98% | 1.02% |
| All Japonica | 365 | 96.71% | 3.29% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 368 | 98.37% | 1.63% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 243 | 97.12% | 2.88% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 41 | 95.12% | 4.88% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801624059 | T->G | INTERGENIC | None |