Detailed information of SNP:
|
SNP ID:
sf0801628580(Gbrowse)
Chromosome: chr08 Position: 1628580 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 76.34% | 23.66% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 495 | 36.97% | 63.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 16.47% | 83.53% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801628580 | A->C | LOC_Os08g03470(LOC_Os08g03470.1) | INTRON |