Detailed information of SNP:
|
SNP ID:
sf0801630585(Gbrowse)
Chromosome: chr08 Position: 1630585 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.07% | 6.93% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 89.76% | 10.24% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801630585 | C->T | INTERGENIC | None |