Detailed information of SNP:
|
SNP ID:
sf0801653177(Gbrowse)
Chromosome: chr08 Position: 1653177 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801653177 | A->T | LOC_Os08g03560(LOC_Os08g03560.1) | INTRON |
| sf0801653177 | A->T | LOC_Os08g03560(LOC_Os08g03560.2) | INTRON |