Detailed information of SNP:
|
SNP ID:
sf0801688795(Gbrowse)
Chromosome: chr08 Position: 1688795 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.40% | 43.60% |
| All Indica | 795 | 28.05% | 71.95% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 209 | 27.27% | 72.73% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801688795 | G->A | INTERGENIC | None |