Detailed information of SNP:
|
SNP ID:
sf0801696886(Gbrowse)
Chromosome: chr08 Position: 1696886 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 93.66% | 6.34% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 468 | 82.05% | 17.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 82 | 35.37% | 64.63% |
| Japonica Intermediate | 55 | 56.36% | 43.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801696886 | T->A | INTERGENIC | None |