Detailed information of SNP:
|
SNP ID:
sf0801697746(Gbrowse)
Chromosome: chr08 Position: 1697746 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 86.89% | 13.11% |
| All Indica | 796 | 93.22% | 6.78% |
| All Japonica | 494 | 75.51% | 24.49% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801697746 | T->C | INTERGENIC | None |