Detailed information of SNP:
|
SNP ID:
sf0801771489(Gbrowse)
Chromosome: chr08 Position: 1771489 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 61.63% | 38.37% |
| All Indica | 794 | 86.15% | 13.85% |
| All Japonica | 495 | 23.03% | 76.97% |
| Aus | 34 | 58.82% | 41.18% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801771489 | T->C | INTERGENIC | None |