Detailed information of SNP:
|
SNP ID:
sf0801774702(Gbrowse)
Chromosome: chr08 Position: 1774702 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 69.96% | 30.04% |
| All Indica | 779 | 47.88% | 52.12% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 50.00% | 50.00% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 201 | 49.25% | 50.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801774702 | G->A | LOC_Os08g03730(LOC_Os08g03730.1) | Non-Synonymous SNP |