Detailed information of SNP:
|
SNP ID:
sf0801774720(Gbrowse)
Chromosome: chr08 Position: 1774720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 71.62% | 28.38% |
| All Indica | 766 | 50.52% | 49.48% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 358 | 52.23% | 47.77% |
| Indica II | 207 | 45.41% | 54.59% |
| Indica Intermediate | 201 | 52.74% | 47.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801774720 | G->A | LOC_Os08g03730(LOC_Os08g03730.1) | Non-Synonymous SNP |