Detailed information of SNP:
|
SNP ID:
sf0801787468(Gbrowse)
Chromosome: chr08 Position: 1787468 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.72% | 42.28% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801787468 | C->A | LOC_Os08g03760(LOC_Os08g03760.1) | Synonymous |