Detailed information of SNP:
|
SNP ID:
sf0801795063(Gbrowse)
Chromosome: chr08 Position: 1795063 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 797 | 65.75% | 34.25% |
| All Japonica | 497 | 73.44% | 26.56% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801795063 | A->G | LOC_Os08g03780(LOC_Os08g03780.1) | INTRON |