Detailed information of SNP:
|
SNP ID:
sf0801798120(Gbrowse)
Chromosome: chr08 Position: 1798120 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.95% | 29.05% |
| All Indica | 795 | 74.47% | 25.53% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 67.74% | 32.26% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801798120 | A->T | LOC_Os08g03780(LOC_Os08g03780.1) | UTR_3_PRIME |