Detailed information of SNP:
|
SNP ID:
sf0801798524(Gbrowse)
Chromosome: chr08 Position: 1798524 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 70.80% | 29.20% |
| All Indica | 782 | 74.55% | 25.45% |
| All Japonica | 484 | 72.52% | 27.48% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 372 | 68.28% | 31.72% |
| Indica II | 202 | 79.21% | 20.79% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 324 | 96.30% | 3.70% |
| Tropical Japonica | 92 | 9.78% | 90.22% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801798524 | T->C | INTERGENIC | None |