Detailed information of SNP:
|
SNP ID:
sf0801801008(Gbrowse)
Chromosome: chr08 Position: 1801008 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.98% | 11.02% |
| All Indica | 799 | 82.35% | 17.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801801008 | G->A | INTERGENIC | None |