Detailed information of SNP:
|
SNP ID:
sf0801814197(Gbrowse)
Chromosome: chr08 Position: 1814197 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 71.91% | 28.09% |
| All Indica | 794 | 96.98% | 3.02% |
| All Japonica | 494 | 27.13% | 72.87% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801814197 | A->G | INTERGENIC | None |