Detailed information of SNP:
SNP ID:
sf0801818954(Gbrowse)
Chromosome: chr08 Position: 1818954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1396 | 62.32% | 37.68% |
All Indica | 783 | 38.44% | 61.56% |
All Japonica | 497 | 98.39% | 1.61% |
Aus | 60 | 68.33% | 31.67% |
Indica I | 367 | 41.96% | 58.04% |
Indica II | 209 | 40.19% | 59.81% |
Indica Intermediate | 207 | 30.43% | 69.57% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0801818954 | C->T | LOC_Os08g03810(LOC_Os08g03810.1) | Non-Synonymous SNP |