Detailed information of SNP:
|
SNP ID:
sf0801818954(Gbrowse)
Chromosome: chr08 Position: 1818954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 62.32% | 37.68% |
| All Indica | 783 | 38.44% | 61.56% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 60 | 68.33% | 31.67% |
| Indica I | 367 | 41.96% | 58.04% |
| Indica II | 209 | 40.19% | 59.81% |
| Indica Intermediate | 207 | 30.43% | 69.57% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801818954 | C->T | LOC_Os08g03810(LOC_Os08g03810.1) | Non-Synonymous SNP |