Detailed information of SNP:
|
SNP ID:
sf0801821516(Gbrowse)
Chromosome: chr08 Position: 1821516 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 67.59% | 32.41% |
| All Indica | 781 | 43.79% | 56.21% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 40.49% | 59.51% |
| Indica II | 206 | 42.72% | 57.28% |
| Indica Intermediate | 207 | 50.72% | 49.28% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801821516 | C->T | LOC_Os08g03810(LOC_Os08g03810.1) | Synonymous |