Detailed information of SNP:
|
SNP ID:
sf0801844033(Gbrowse)
Chromosome: chr08 Position: 1844033 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.83% | 40.17% |
| All Indica | 799 | 75.84% | 24.16% |
| All Japonica | 497 | 27.57% | 72.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801844033 | G->T | LOC_Os08g03870(LOC_Os08g03870.2) | INTRON |
| sf0801844033 | G->T | LOC_Os08g03870(LOC_Os08g03870.1) | INTRON |