Detailed information of SNP:
|
SNP ID:
sf0801845006(Gbrowse)
Chromosome: chr08 Position: 1845006 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 75.84% | 24.16% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801845006 | T->A | LOC_Os08g03870(LOC_Os08g03870.2) | UTR_3_PRIME |
| sf0801845006 | T->A | LOC_Os08g03870(LOC_Os08g03870.1) | UTR_3_PRIME |