Detailed information of SNP:
|
SNP ID:
sf0801846603(Gbrowse)
Chromosome: chr08 Position: 1846603 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.07% | 39.93% |
| All Indica | 795 | 76.35% | 23.65% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801846603 | G->T | INTERGENIC | None |