Detailed information of SNP:
|
SNP ID:
sf0801857516(Gbrowse)
Chromosome: chr08 Position: 1857516 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.59% | 23.41% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 497 | 73.84% | 26.16% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801857516 | G->T | LOC_Os08g03900(LOC_Os08g03900.1) | INTRON |