Detailed information of SNP:
|
SNP ID:
sf0801865120(Gbrowse)
Chromosome: chr08 Position: 1865120 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 53.66% | 46.34% |
| All Indica | 789 | 73.13% | 26.87% |
| All Japonica | 496 | 25.40% | 74.60% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 372 | 68.01% | 31.99% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801865120 | C->T | LOC_Os08g03920(LOC_Os08g03920.1) | Non-Synonymous SNP |