Detailed information of SNP:
|
SNP ID:
sf0801866235(Gbrowse)
Chromosome: chr08 Position: 1866235 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 65.65% | 34.35% |
| All Indica | 789 | 93.54% | 6.46% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801866235 | C->T | INTERGENIC | None |