Detailed information of SNP:
|
SNP ID:
sf0801870201(Gbrowse)
Chromosome: chr08 Position: 1870201 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 61.96% | 38.04% |
| All Indica | 789 | 80.10% | 19.90% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 75.61% | 24.39% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801870201 | T->C | LOC_Os08g03930(LOC_Os08g03930.1) | Non-Synonymous SNP |