Detailed information of SNP:
|
SNP ID:
sf0801876392(Gbrowse)
Chromosome: chr08 Position: 1876392 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 61.89% | 38.11% |
| All Indica | 769 | 80.62% | 19.38% |
| All Japonica | 497 | 26.76% | 73.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 75.98% | 24.02% |
| Indica II | 204 | 85.29% | 14.71% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801876392 | C->A | LOC_Os08g03940(LOC_Os08g03940.1) | INTRON |