Detailed information of SNP:
|
SNP ID:
sf0801876573(Gbrowse)
Chromosome: chr08 Position: 1876573 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 68.35% | 31.65% |
| All Indica | 764 | 93.46% | 6.54% |
| All Japonica | 497 | 27.16% | 72.84% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 352 | 91.19% | 8.81% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 202 | 95.54% | 4.46% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801876573 | C->T | INTERGENIC | None |