Detailed information of SNP:
|
SNP ID:
sf0801911290(Gbrowse)
Chromosome: chr08 Position: 1911290 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 50.96% | 49.04% |
| All Indica | 795 | 69.69% | 30.31% |
| All Japonica | 495 | 23.64% | 76.36% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 60.75% | 39.25% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801911290 | C->G | INTERGENIC | None |