Detailed information of SNP:
|
SNP ID:
sf0801918811(Gbrowse)
Chromosome: chr08 Position: 1918811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.61% | 25.39% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 496 | 73.39% | 26.61% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 69.07% | 30.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801918811 | G->A | INTERGENIC | None |