Detailed information of SNP:
|
SNP ID:
sf0801923211(Gbrowse)
Chromosome: chr08 Position: 1923211 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.13% | 14.87% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801923211 | G->A | INTERGENIC | None |