Detailed information of SNP:
|
SNP ID:
sf0801961019(Gbrowse)
Chromosome: chr08 Position: 1961019 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 58.72% | 41.28% |
| All Indica | 793 | 94.83% | 5.17% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 59 | 62.71% | 37.29% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801961019 | T->C | INTERGENIC | None |