Detailed information of SNP:
|
SNP ID:
sf0801982619(Gbrowse)
Chromosome: chr08 Position: 1982619 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.05% | 8.95% |
| All Indica | 790 | 84.30% | 15.70% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 72.75% | 27.25% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801982619 | G->A | INTERGENIC | None |