Detailed information of SNP:
|
SNP ID:
sf0801986035(Gbrowse)
Chromosome: chr08 Position: 1986035 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 98.04% | 1.96% |
| All Indica | 764 | 96.73% | 3.27% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 94.52% | 5.48% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801986035 | T->C | INTERGENIC | None |