Detailed information of SNP:
|
SNP ID:
sf0802031090(Gbrowse)
Chromosome: chr08 Position: 2031090 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 54.49% | 45.51% |
| All Indica | 796 | 23.87% | 76.13% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 374 | 31.28% | 68.72% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 209 | 30.62% | 69.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802031090 | A->G | LOC_Os08g04180(LOC_Os08g04180.1) | INTRON |