Detailed information of SNP:
|
SNP ID:
sf0802039253(Gbrowse)
Chromosome: chr08 Position: 2039253 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1144 | 86.54% | 13.46% |
| All Indica | 546 | 72.89% | 27.11% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 53 | 98.11% | 1.89% |
| Indica I | 243 | 65.43% | 34.57% |
| Indica II | 156 | 78.21% | 21.79% |
| Indica Intermediate | 147 | 79.59% | 20.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802039253 | C->T | INTERGENIC | None |