Detailed information of SNP:
|
SNP ID:
sf0802052472(Gbrowse)
Chromosome: chr08 Position: 2052472 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.60% | 44.40% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802052472 | T->G | INTERGENIC | None |