Detailed information of SNP:
|
SNP ID:
sf0802053567(Gbrowse)
Chromosome: chr08 Position: 2053567 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 92.62% | 7.38% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 340 | 73.53% | 26.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 219 | 68.04% | 31.96% |
| Tropical Japonica | 78 | 91.03% | 8.97% |
| Japonica Intermediate | 43 | 69.77% | 30.23% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802053567 | C->T | LOC_Os08g04210(LOC_Os08g04210.1) | Non-Synonymous SNP |