Detailed information of SNP:
|
SNP ID:
sf0802067174(Gbrowse)
Chromosome: chr08 Position: 2067174 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 91.99% | 8.01% |
| All Indica | 778 | 85.73% | 14.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 79.72% | 20.28% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802067174 | A->G | INTERGENIC | None |