Detailed information of SNP:
|
SNP ID:
sf0802077090(Gbrowse)
Chromosome: chr08 Position: 2077090 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.06% | 35.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802077090 | T->C | LOC_Os08g04270(LOC_Os08g04270.2) | INTRON |
| sf0802077090 | T->C | LOC_Os08g04270(LOC_Os08g04270.3) | INTRON |
| sf0802077090 | T->C | LOC_Os08g04270(LOC_Os08g04270.1) | INTRON |