Detailed information of SNP:



SNP ID: sf0802089521(Gbrowse)

Chromosome: chr08

Position: 2089521
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1419 96.26% 3.74%
All Indica799 99.75% 0.25%
All Japonica497 99.60% 0.40%
Aus67 31.34% 68.66%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0802089521 A->T LOC_Os08g04280(LOC_Os08g04280.2) INTRON
sf0802089521 A->T LOC_Os08g04280(LOC_Os08g04280.1) INTRON