Detailed information of SNP:
|
SNP ID:
sf0802101129(Gbrowse)
Chromosome: chr08 Position: 2101129 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 74.29% | 25.71% |
| All Indica | 799 | 61.08% | 38.92% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802101129 | T->C | INTERGENIC | None |