Detailed information of SNP:
|
SNP ID:
sf0802111150(Gbrowse)
Chromosome: chr08 Position: 2111150 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.84% | 25.16% |
| All Indica | 799 | 64.21% | 35.79% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802111150 | T->C | INTERGENIC | None |