Detailed information of SNP:
|
SNP ID:
sf0802208038(Gbrowse)
Chromosome: chr08 Position: 2208038 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.89% | 39.11% |
| All Indica | 795 | 39.12% | 60.88% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 47.20% | 52.80% |
| Indica II | 211 | 18.01% | 81.99% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802208038 | T->A | LOC_Os08g04490(LOC_Os08g04490.1) | Non-Synonymous SNP |