Detailed information of SNP:
|
SNP ID:
sf0802209645(Gbrowse)
Chromosome: chr08 Position: 2209645 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.70% | 22.30% |
| All Indica | 797 | 61.61% | 38.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802209645 | A->G | LOC_Os08g04500(LOC_Os08g04500.2) | INTRON |
| sf0802209645 | A->G | LOC_Os08g04500(LOC_Os08g04500.1) | INTRON |