Detailed information of SNP:
|
SNP ID:
sf0802210665(Gbrowse)
Chromosome: chr08 Position: 2210665 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 62.07% | 37.93% |
| All Indica | 795 | 38.49% | 61.51% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 208 | 44.71% | 55.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802210665 | A->G | LOC_Os08g04500(LOC_Os08g04500.2) | INTRON |
| sf0802210665 | A->G | LOC_Os08g04500(LOC_Os08g04500.1) | INTRON |