Detailed information of SNP:
|
SNP ID:
sf0802211247(Gbrowse)
Chromosome: chr08 Position: 2211247 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 64.34% | 35.66% |
| All Indica | 788 | 38.96% | 61.04% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 46.67% | 53.33% |
| Indica II | 209 | 18.18% | 81.82% |
| Indica Intermediate | 204 | 46.08% | 53.92% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802211247 | T->G | LOC_Os08g04500(LOC_Os08g04500.2) | INTRON |
| sf0802211247 | T->G | LOC_Os08g04500(LOC_Os08g04500.1) | INTRON |