Detailed information of SNP:
|
SNP ID:
sf0802218196(Gbrowse)
Chromosome: chr08 Position: 2218196 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 98.01% | 1.99% |
| All Indica | 789 | 96.58% | 3.42% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802218196 | T->C | LOC_Os08g04510(LOC_Os08g04510.1) | Synonymous |