Detailed information of SNP:
|
SNP ID:
sf0802221503(Gbrowse)
Chromosome: chr08 Position: 2221503 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 60.14% | 39.86% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802221503 | A->G | LOC_Os08g04510(LOC_Os08g04510.1) | Synonymous |