Detailed information of SNP:
|
SNP ID:
sf0802223910(Gbrowse)
Chromosome: chr08 Position: 2223910 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 58.23% | 41.77% |
| All Indica | 754 | 94.56% | 5.44% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 36 | 88.89% | 11.11% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 186 | 92.47% | 7.53% |
| Indica Intermediate | 197 | 94.42% | 5.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802223910 | G->A | INTERGENIC | None |